A novel cocrystal of 5-fluorouracil with 2,2’-dipyridylamine: Synthesis, structural characterization, thermal analysis and in silico anticancer evaluation as a thymidylate synthase inhibitor


YILDIRIM N., İÇSEL YILMAZ C., Ercan S., AYGÜN M., YILMAZ V. T.

Journal of Molecular Structure, cilt.1318, 2024 (SCI-Expanded) identifier

  • Yayın Türü: Makale / Tam Makale
  • Cilt numarası: 1318
  • Basım Tarihi: 2024
  • Doi Numarası: 10.1016/j.molstruc.2024.139310
  • Dergi Adı: Journal of Molecular Structure
  • Derginin Tarandığı İndeksler: Science Citation Index Expanded (SCI-EXPANDED), Scopus, Academic Search Premier, Chemical Abstracts Core, Chimica, Compendex, INSPEC
  • Anahtar Kelimeler: 2,2’-dipyridylamine, 5-fluorouracil, Cocrystal, Molecular docking, Molecular dynamics simulation, Thymidylate synthase inhibition
  • Karadeniz Teknik Üniversitesi Adresli: Evet

Özet

A new cocrystal containing 5-fluorouracil (5-FU) and 2,2’-dipyridylamine (dpya) was successfully prepared by a slow evaporation solution method and characterized using solid-state techniques such as FTIR, thermal analysis (DTA/TG) and single crystal X-ray diffraction. X-ray crystallography indicated the formation of a 2:1 5-FU:dpya cocrystal. The 5-FU and dpya molecules in the cocrystal were linked by N−H···O, N−H···N, C−H···O and C−H···F hydrogen bonds, forming a two-dimensional layers, further extended to a three dimensional supramolecular network via π-stacking interactions. Thermal analysis data showed that the cocrystal exhibited a lower thermal stability than 5-FU, but it is more stable than dpya. Molecular docking method was used to investigate in silico anticancer activity of the new co-crystal against a cancer target protein, human thymidylate synthase (TS). The free binding affinity of the cocrystal towards TS was notably higher than those of both reference ligands 5-FU and 5-fluorodeoxyuridine monophosphate (FdUMP), indicating the enzyme inhibition and anticancer potential of the cocrystal. Additionally, the molecular dynamics (MD) simulation and binding free energy studies confirmed the stability of the TS-cocrystal complex in a period of 50 ns.