Actionable secondary findings in genes related to cancer phenotypes in 2020 whole exome sequenced Turkish participants


Türkyılmaz A., Adanur Sağlam K., Demir O., Yılmaz M., Apuhan T., Çebi A. H.

57th European Society of Human Genetics (ESHG) Conference, Berlin, Almanya, 1 - 04 Haziran 2024, ss.930

  • Yayın Türü: Bildiri / Özet Bildiri
  • Doi Numarası: 10.1038/s41431-024-01733-5
  • Basıldığı Şehir: Berlin
  • Basıldığı Ülke: Almanya
  • Sayfa Sayıları: ss.930
  • Karadeniz Teknik Üniversitesi Adresli: Evet

Özet

Background: Big data generated from whole exome sequencing

(WES) and whole genome sequencing (WGS) analyses can be

used to detect actionable and high-penetrance variants that are

not directly associated with the primary diagnosis of patients but

can guide their clinical follow-up and treatment. Variants that are

classified as pathogenic/likely pathogenic and are clinically

significant but not directly associated with the primary diagnosis

of patients are defined as secondary findings (SF). The aim of this

study was to examine the frequency and variant spectrum of cancer related SF in the Turkish population and to discuss the

importance of the presence of cancer related SF in at-risk family

members in terms of genetic counseling and follow-up.

Methods: A total of 2020 patients from 2020 different families

were evaluated by WES.

Results: SF were detected in 20 unrelated cases (0.99%), and

variants in BRCA2 (11 patients) and BRCA2 (2 patients) genes were

observed most frequently. A total of 17 different variants were

identified, with 4 of them (c.9919_9932del and c.3653delG in the

BRCA2 gene, c.2002A>G in the MSH2 gene, c.26_29delTGCC in the

TMEM127 gene) being novel variations. In 3 different families,

c.1189C>T (p.Q397*) variation in BRCA2 gene was detected,

suggesting that this may be a common variant in the Turkish

population.

Conclusion: This study represents the largest cohort conducted

in the Turkish population, examining the frequency and variant

spectrum of cancer-related SF. Genetic testing conducted in family

members is presented as real-life data, showcasing the implications

in terms of counseling, monitoring, and treatment through

case examples.

Grants: None.

Conflict of Interest: None declared