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Education Information
2007 - 2013
2007 - 2013Doctorate
Dokuz Eylul University, Faculty Of Engıneerıng, Department Of Computer Engıneerıng, Turkey
2003 - 2007
2003 - 2007Postgraduate
Dokuz Eylul University, Faculty Of Engıneerıng, Department Of Computer Engıneerıng, Turkey
1998 - 2002
1998 - 2002Undergraduate
Karadeniz Technical University, Fen Fakültesi, Bilgisayar Bilimleri, Turkey
Dissertations
2013
2013Doctorate
Integration of Content-Based Image Retrieval and Database Management System: A Case Study with Digital Mammography
Dokuz Eylul University, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümü
Foreign Languages
C1 Advanced
C1 AdvancedEnglish
Certificates, Courses and Trainings
2016
2016Ufuk 2020'de TÜRKİYE Genel Eğitimi
Education Management and Planning
TÜBİTAK
2014
2014Fen Bilimlerinde Araştırma Projesi Hazırlama Eğitimi
Education Management and Planning
TÜBİTAK
Research Areas
Computer Sciences
algorithms
Performance Modelling and Evaluation
Simulation and Modelling
Distributed Systems
Parallel Algorithms
Computer Vision
Computer Vision
bioinformatics
Database and Data Structures
Artificial Intelligence, Computer Learning and Pattern Recognition
Software
Operating Systems
Programming Languages
Software Engineering
Engineering and Technology
Academic Titles / Tasks
2018 - Continues
2018 - ContinuesAssistant Professor
Karadeniz Technical University, Fen Fakültesi, Bilgisayar Bilimleri
2013 - 2018
2013 - 2018Assistant Professor
Karadeniz Technical University, Fen Fakültesi, Bilgisayar Bilimleri
2012 - 2013
2012 - 2013Research Assistant PhD
Karadeniz Technical University, Fen Fakültesi, Bilgisayar Bilimleri
2003 - 2012
2003 - 2012Research Assistant
Dokuz Eylul University, Faculty Of Engıneerıng, Department Of Computer Engıneerıng
2002 - 2003
2002 - 2003Research Assistant
Karadeniz Technical University, Fen Fakültesi, Bilgisayar Bilimleri
Managerial Experience
2013 - 2023
2013 - 2023Deputy Head of Department
Karadeniz Technical University, Fen Fakültesi, Bilgisayar Bilimleri
Non Academic Experience
1997 - 2002
1997 - 2002Eğitmen
Özel Somel Bilgisayar Kursu, Eğitmen
1996 - 2002
1996 - 2002Business Establishment Private, Özel Trabzon Somel Bilgisayar Kursu
Courses
Supervised Theses
2023
2023Postgraduate
LINEAR OPTIMIZATION APPROACHES FOR PUBLIC TRANSPORTATION SYSTEMS
Berber T. (Advisor)
B.SİYAH(Student)
2022
2022Postgraduate
TOPIC MODELING WITH LDA AND NMF IN ENGLISH NEWS TEXTS: THE CASE OF TURKEY AND GREECE
Berber T. (Advisor)
S.YAY(Student)
2020
2020Doctorate
Evaluation of the performances of fuzzy cluster approaches in clustering burn wound images
Berber T. (Advisor)
Y.AKBAŞ(Student)
2019
2019Postgraduate
Comparison of ANFIS and ARIMA models via industry 4.0 data
Berber T. (Advisor)
B.İPEK(Student)
2018
2018Postgraduate
Authorship recognition with text mining methods: The example of Divan literature
Berber T. (Advisor)
A.OSMAN(Student)
2018
2018Postgraduate
Facial expression recognition with machine learning in real-time video
Berber T. (Advisor)
M.BEKİR(Student)
2017
2017Postgraduate
Computer-aided selection of correct statistical tests in data analysis
Berber T. (Advisor)
M.SARİ(Student)
2017
2017Postgraduate
Sentiment analysis in turkish social media texts
Berber T. (Advisor)
H.AMANET(Student)
Published journal articles indexed by SCI, SSCI, and AHCI
2025
2025Artificial Circulation System Algorithm: A Novel Bio-Inspired Algorithm
Ozcan N., UTKU S., BERBER T.
CMES-COMPUTER MODELING IN ENGINEERING & SCIENCES
, vol.142, no.1, pp.635-663, 2025 (SCI-Expanded)
2023
2023Estimating Mediterranean stand fuel characteristics using handheld mobile laser scanning technology
COŞKUNER K. A., Vatandaslar C., ÖZTÜRK M., HARMAN İ., BİLGİLİ E., KARAHALİL U., et al.
INTERNATIONAL JOURNAL OF WILDLAND FIRE
, vol.32, no.9, pp.1347-1363, 2023 (SCI-Expanded)
2019
2019Automatic classification of skin burn colour images using texture-based feature extraction
ŞEVİK U., KARAKULLUKÇU E., BERBER T., AKBAŞ Y., TÜRKYILMAZ S.
IET IMAGE PROCESSING
, vol.13, no.11, pp.2018-2028, 2019 (SCI-Expanded)
2019
2019Diurnal surface fuel moisture prediction model for Calabrian pine stands in Turkey
BİLGİLİ E., COŞKUNER K. A., Usta Y., SAĞLAM B., KÜÇÜK Ö., BERBER T., et al.
IFOREST-BIOGEOSCIENCES AND FORESTRY
, vol.12, pp.262-271, 2019 (SCI-Expanded)
2014
2014Identification of suitable fundus images using automated quality assessment methods
ŞEVİK U., KÖSE C., BERBER T., ERDÖL H.
JOURNAL OF BIOMEDICAL OPTICS
, vol.19, no.4, 2014 (SCI-Expanded)
2013
2013Breast mass contour segmentation algorithm in digital mammograms
Berber T., Alpkocak A., Balci P., Dicle O.
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
, vol.110, no.2, pp.150-159, 2013 (SCI-Expanded)
Articles Published in Other Journals
2025
2025Performance Comparison of Text Weighting Schemas on NMF-Based Topic Analysis
Berber T., Büyükkaya M. E.
Dokuz Eylül Üniversitesi Mühendislik Fakültesi Fen ve Mühendislik Dergisi
, vol.27, no.79, pp.46-53, 2025 (Peer-Reviewed Journal)
2022
2022AN ALGORITHM FOR THE VERTICES ON THE PATHS OF MINIMAL LENGTH IN THE SUBORBITAL GRAPHS
Akbaba Ü., Değer A. H., Berber T.
Proceedings of the 6th International Conference on Computational Mathematics and Engineering Sciences (CMES-2022) , vol.1, no.1, pp.250-255, 2022 (Conference Book)
2020
2020Performance Evaluation of Distance Metrics on Fuzzy Clustering of Burn Images
Akbaş Y., Berber T.
Dokuz Eylül Üniversitesi Mühendislik Fakültesi Fen ve Mühendislik Dergisi , vol.22, no.65, pp.639-647, 2020 (Peer-Reviewed Journal)
Refereed Congress / Symposium Publications in Proceedings
2024
2024Preliminary Results of Canopy Fuel Load Estimation Using Mobile Laser Scanning in Turkish Red Pine Stands
Coşkuner K. A., Vatandaşlar C., Öztürk M., Harman İ., Karahalil U., Berber T., et al.
3rd International Conference on Environmental Protection and Disaster Risks (ENVIRORISKs2024), Sofija, Bulgaria, 4 - 06 June 2024, vol.883, pp.374-380
2024
2024Integration of Non-Negative Matrix Factorization to Identification of Immune System Checkpoints
Siyah B., Kalaycı M. E., Özdemir S., Berber T., Turhan K.
15. Tıp Bilişimi Kongresi, Trabzon, Turkey, 30 - 31 May 2024, pp.158-170
2024
2024Analysis of Findings in Radiology Reports Using Non-Negative Matrix Factorization
Karayağız E., Berber T.
15th Turkish Congress of Medical Informatics Association, Trabzon, Turkey, 30 - 31 May 2024, pp.235-243
2022
2022AN ALGORITHM FOR THE VERTICES ON THE PATHS OF MINIMAL LENGTH IN THE SUBORBITAL GRAPHS
Akbaba Ü., Değer A. H., Berber T.
THE SIXTH INTERNATIONAL CONFERENCE ON COMPUTATIONAL MATHEMATICS AND ENGINEERING SCIENCES (CMES-2022), Ordu, Turkey, 20 - 22 May 2022, pp.188
2022
2022Development of a Real-Time Abrasion Monitoring and Forward Prediction System for Rubber Lifter Bars in Grinding Mills
Altuncu A., Çalışkan B., Şevik U., Berber T., Erdöl H., Yazıcı E. Y., et al.
IMPS-2022 17th International Mineral Processing Symposium, İstanbul, Turkey, 15 - 17 December 2022, vol.17, pp.123-130
2021
2021Orman Yangınlarının Uzaktan Algılama Teknikleri ve Karar Destek Sistemleri ile Analizi: 2021 Yılı Büyük Marmaris-Armutalan Yangını Örneği
Coşkuner K. A., Çil B., Bilgili E., Berber T.
IV. Ulusal Karadeniz Ormancılık Kongresi, Trabzon, Turkey, 06 December 2021 - 09 January 2022
2021
2021VERİ ANALİZİ YÖNTEMİ İLE YUNUS EMRE YAYINLARINA BİR YAKLAŞIM
Coşar A. M., Berber T.
Vefatının 700. Yılında Bizim Yunus Sempozyumu Vefatının 700. Yılında Bizim Yunus Sempozyumu (26-28 Mayıs 2021), Aksaray, Turkey, 26 - 28 May 2021, vol.1, pp.117-133
2021
2021Linear Optimization Approaches for Public Transport Systems
Siyah B., Akbaş S., Berber T.
XXI. International Symposium on Econometrics, Operational Research and Statistics, Çanakkale, Turkey, 8 - 10 September 2021, no.51372, pp.76-79
2019
2019Evaluation of Short Term Results of Turkish Fire Weather Index System Software: A Case Study in Köyceğiz State Forest Enterprise
COŞKUNER K. A., BERBER T., BİLGİLİ E.
9th International Symposium on Atmospheric Sciences, İstanbul, Turkey, 23 - 26 October 2019, pp.99-104
2018
2018Software Development and Structure of the Fire Danger Rating System in Turkey
Coşkuner K. A., Berber T., Şevik U., Usta Y., Bilgili E.
8th International Conferance on Forest Fire Research, Coimbra, Portugal, 12 - 16 November 2018, pp.193
2017
2017Yanık Görüntülerinin Kümelenmesinde Bulanık Kümeleme Yaklaşımının Başarımlarının Ölçülmesi
AKBAŞ Y., BERBER T.
XIX. Ulusal ve II. Uluslararası Biyoistatistik Kongresi, Antalya, Turkey, 25 - 28 October 2017, pp.24
2017
2017Development and structure of the Turkish National Fire Weather Index System’s Software
COŞKUNER K. A., BİLGİLİ E., BERBER T., ŞEVİK U., USTA Y.
International Symposium on New Horizons in Forestry (ISFOR 2017), Isparta, Turkey, 18 - 20 October 2017, pp.112
2017
2017Determining Unnecessary Test Orders in Biochemistry Laboratories: A Case Study for Thyroid Hormone Tests
AKBAŞ Y., AKBAŞ S., BERBER T.
10th International Statistics Congress, Ankara, Turkey, 6 - 08 December 2017, pp.219
2017
2017Performance Comparison of the Distance Metrics in Fuzzy Clustering of Burn Images
AKBAŞ Y., BERBER T.
10th International Statistics Congress, Ankara, Turkey, 6 - 08 December 2017, pp.111
2017
2017Comparison of the Effect of Color Spaces in Fuzzy Clustering of Burn Images
AKBAŞ Y., BERBER T.
International Conference on Computational and Statistical Methods in Applied Sciences, Samsun, Turkey, 9 - 11 November 2017, pp.192
2017
2017Association Analysis Method for Determining Unnecessary Test Orders and Effective Use of HbA1C Test
AKBAŞ Y., AKBAŞ S., BERBER T.
International Conference on Computational and Statistical Methods in Applied Sciences, Samsun, Turkey, 9 - 11 November 2017, pp.244-245
2017
2017Biyokimya Laboratuvarı Test İstemlerinin Etkin Kullanımının Birliktelik Analizi Yöntemi ile İncelenmesi
AKBAŞ Y., AKBAŞ S., BERBER T., ÖREM A.
XVIII. Uluslararası Ekonometri, Yöneylem Araştırması ve İstatistik Sempozyumu 2017, Trabzon, Turkey, 5 - 07 October 2017, pp.420
2017
2017An Implementation of Industrial Internet of Things Based Total Quality Management in the Food Industry
ŞEN K. Ö., DURAKBAŞA N., ERDÖL H., BERBER T., ŞEVİK U.
International Symposium for Production Research 2017, Viyana, Austria, 13 - 15 September 2017, pp.66
2016
2016Yerli İstatistiksel Veri Analiz Platformu
BERBER T., SARİ M.
Xth International Statistics Days Conference, Giresun, Turkey, 7 - 09 October 2016, pp.1
2016
2016Anket Çalışmalarında Diğer Seçeneğinde Bulunan Açıklamaların Gözetimli Sınıflandırma Yöntemleri İle İlgili Seçeneğe Aktarılması
BİLGİN A. O., BERBER T.
X. International Statistics Days Conference, Giresun, Turkey, 7 - 09 October 2016, pp.648-654
2014
2014Computer Based Extraction of Phenoptypic Features of Human Congenital Anomalies from the Digital Literature with Natural Language Processing Techniques
Karakulah G., DİCLE O., Kosaner O., SUNER KARAKÜLAH A., Birant C. C., BERBER T., et al.
25th European Medical Informatics Conference (MIE), İstanbul, Turkey, 31 August - 03 September 2014, vol.205, pp.570-574
2013
2013ÇAĞRIŞIM: Türkçeyi ve Bireyi Geliştirici Eğitim Oyunu
BERBER T., Suncak A., BİRANT Ç. C., Aktaş Ö.
XVIII. Türkiye'de İnternet Konferansı, İstanbul, Turkey, 9 - 11 December 2013, pp.1-4
2013
2013Retina Görüntülerinin İstatistiksel Olarak Kalite Değerlendirmesi
ŞEVİK U., BERBER T., ERDÖL H.
8. Uluslararası İstatistik Kongresi, Antalya, Turkey, 27 - 30 October 2013, pp.278-279
2013
2013Göğüs Kitlelerinin Yoğunluklarının Mamografi Görüntülerinden İstatistiksel Olarak Elde Edilmesi
BERBER T., ŞEVİK U., Alpkoçak A., Balci P.
8. Uluslararası İstatistik Kongresi, Antalya, Turkey, 27 - 30 October 2013, pp.105-106
2011
2011DEMIR at ImageCLEFMed 2011: Evaluation of Fusion Techniques for Multimodal Content-Based Medical Image Retrieval
Alpkoçak A., Öztürkmenoğlu O., BERBER T., Vahid A. H., Hamed R. G.
ImageCLEF 2011, Amsterdam, Netherlands, 19 - 22 September 2011, pp.1-10
2011
2011DEMIR at ImageCLEFwiki 2011:Evaluating Different Weighting Schemes in Information Retrieval
BERBER T., Vahid A. H., Öztürkmenoğlu O., Hamed R. G., Alpkoçak A.
ImageCLEF 2011, Amsterdam, Netherlands, 19 - 22 September 2011, pp.1-7
2009
2009İçerik Tabanlı Tıbbi Görüntü Erişimi için Bütünleştirilmiş Bilgi Erişimi Modeli
BERBER T., Alpkoçak A.
VI. Ulusal Tıp Bilişimi Kongresi, Antalya, Turkey, 12 - 15 November 2009, pp.344-351
2009
2009DEU at ImageCLEFmed 2009: Evaluating Re-Ranking and Integrated Retrieval Model
BERBER T., Alpkoçak A.
ImageCLEF 2009, Corfu, Greece, 30 September - 02 October 2009, pp.1-8
2009
2009Mamografi Raporları için Mnatıksal Bilgi Erişim Sistemi
BERBER T., Alpkoçak A.
14. Ulusal Biyomedikal Mühendisliği Toplantısı, İzmir, Turkey, 20 - 22 May 2009, pp.1-6
2007
2007MPEG-7 based service guide for mobile TV
Gençpınar E., BERBER T., Seçkin G., Alpkoçak A.
3rd International Conference on Mobile Multimedia Communications, Nafpaktos, Greece, 27 - 29 August 2007, pp.11-16
Books
2017
2017Implementation of Digitalization in Food Industry
ŞEN K. Ö., DURAKBAŞA N., ERDÖL H., BERBER T., BAŞ G., ŞEVİK U.
in: DAAAM INTERNATIONAL SCIENTIFIC BOOK 2017, Branko KATALINIC, Editor, DAAAM International Vienna and DAAAM scriptorium GmbH, Viyana, pp.91-104, 2017
2010
2010Expansion and Re-ranking Approaches for Multimodal Image Retrieval using Text-based Methods
BERBER T., Kilinc D., Alpkoçak A.
in: ImageCLEF: Experimental Evaluation in Visual Information Retrieval, Müller H., Deselaers T., Clough P., Caputo B, Editor, Springer Heidelberg Dordrecht Routledge, London/New York, New York, pp.261-274, 2010
2009
2009An Extended Vector Space Model for Content-Based Image Retrieval
BERBER T., Alpkoçak A.
in: Multilingual Information Access Evaluation II, Peters C., Caputo B., Gonzalo J., Jones G.J.F., Kalpathy-cramer J., Müller H., Tsikrika T., Editor, Springer-Verlag , Berlin, pp.219-222, 2009
Supported Projects
Continues
ContinuesGiyilebilir Teknolojiler Yardımıyla Çalışanların Performanslarının Belirlenmesi ve İş Güvenliğinin Sağlanması
TUBITAK Project
ŞEVİK U. (Executive), BERBER T., ERDÖL H., ERDÖL E. S., BAŞER O.
Continues
ContinuesSosyal Medya ve Doküman Analiz Sistemi
TUBITAK Project
BERBER T. (Executive), ŞEVİK U., COŞAR A. M., SARİ M., AMANET H., SEÇKİN K.
2025 - 2026
2025 - 2026Categorization of User Reviews in Application Stores
TUBITAK Project
(Project Abstract)
Berber T. (Executive), Şevik U.
2024 - 2026
2024 - 2026HEPSİS: HAVA YOLLARI EKİP PLANLAMA SİSTEMİ (THY TEKNOLOJİ)
TUBITAK Project
Şevik U. (Executive), Berber T., Erbay Dalkılıç T.
2024 - 2026
2024 - 2026Dekoratif Ve Teknolojik Clt (çapraz Lamine Ahşap) Geliştirilmesi
TUBITAK Project
Öztürk H. (Executive), Demirkır C., Şevik U., Berber T., Demirci M. A., Bayramoğlu M. M.
2024 - 2025
2024 - 2025Rasyonel Sayılı Köşelere Sahip Graflardaki Jeodezik Yollardan Üretilen Metriklerin Karşılaştırılması
TUBITAK Project
Değer A. H. (Executive), Berber T., Güler B. Ö., Çağlayan Ü., Gökcan İ.
2024 - 2025
2024 - 2025Negatif Olmayan Matris Ayrışımı Temelli Scientometric Analiz Uygulaması Geliştirilmesi
Project Supported by Higher Education Institutions
BERBER T. (Executive), KARAYAĞIZ E.
2023 - 2025
2023 - 2025Transportation Plan Optimization and Decision Support System in Public Transportation
TUBITAK Project
(Project Abstract)
Şevik U. (Executive), Berber T.
2023 - 2025
2023 - 2025Implementation Of A Wireless Sensor Network System For Wear Measurement And Estimation Of Rubber Lifterbars In Ore Grinding Mills
TUBITAK Project
(Project Abstract)
Şevik U., Berber T., MUTLU O.
2022 - 2024
2022 - 2024Orman Yollarının Fonksiyonel Duruma Bağlı Etkinlik Skorunun Belirlenmesi
TUBITAK Project
Gümüş S. (Executive), Berber T.
2022 - 2024
2022 - 2024
Forest Fuel Mapping and Fire Risk-Danger Potential Assessment System (ORYAM-SIS)
TUBITAK Project
(Project Abstract)
Coşkuner K. A. (Executive), Bilgili E., Berber T., Karahalil U., Tunç Görmüş E., Vatandaşlar C., et al.
2019 - 2023
2019 - 2023CA18209 - European network for Web-centred linguistic data science
TÜBİTAK - AB COST Project
Şevik U., Berber T.
2018 - 2022
2018 - 2022Sürekli Kesirlerin Yinelenme Bağıntıları ile Alt Yörüngesel Graflardaki Ağaçların Özel Köşeleri
Project Supported by Higher Education Institutions
DEĞER A. H. (Executive), AKBABA Ü., BERBER T.
2019 - 2021
2019 - 2021
Real-time Monitoring and Prediction of Wear and Operating Parameters of Rubber Lining Products Used in Ore Grinding Mills (FKK-RETİNA-İNOVAS)
TUBITAK Project
Şevik U., Çakır O., Berber T.
2016 - 2020
2016 - 2020Yanık Hastalarının 3-Boyutlu Modellenmesi
Project Supported by Higher Education Institutions
ŞEVİK U. (Executive), BERBER T., TÜRKYILMAZ S., YILMAZ E., KARAKULLUKÇU E., YEGİNOĞLU Y.
2016 - 2018
2016 - 2018Cloud Based Retina Analysis System (RETİNA)
TUBITAK Project
Şevik U. (Executive), Berber T., Karakullukçu E.
2016 - 2018
2016 - 2018Veri Madenciliği Yöntemleri Aracılığı ile Laboratuvar Testlerinin İstem-Gereklilik İlişkisinin Belirlenmesi
Project Supported by Higher Education Institutions
BERBER T. (Executive), ŞEVİK U., AKBAŞ S., YEGİNOĞLU Y., ÖREM A., TAT M.
2015 - 2016
2015 - 2016YERLİ İSTATİSTİKSEL VERİ ANALİZ PLATFORMU
Industrial Thesis Project
BERBER T.
2014 - 2015
2014 - 2015Şehir İçi ve Şehirlerarası Trafik Şebekelerinin Bilgisayar Ortamında Modellenmesi, Simülasyonu ve Analizini Gerçekleştirecek Yerli Bir Yazılımın Üretilmesi
TUBITAK Project
KÖSE C., BERBER T., ŞEVİK U., YILMAZ E. (Executive)
2013 - 2015
2013 - 2015Çağrışım, Türkçe'yi Ve Bireyi Geliştirici Eğitim Oyunu
TUBITAK Project
BERBER T.
2008 - 2011
2008 - 2011Sayısal Mamografi Görüntüleri İçin İçerik Tabanlı Tıbbi Görüntü Erişim Sistemi
TUBITAK Project
Patent
2019
2019Sosyal Medya ve Doküman Analiz Sistemi (TURKCELL Ortaklığında)
Patent
Pending / Applied, The Invention Recourse Number: 2019/21903 , Standard Registration
2018
2018Personel takip ve iş verimliliği analiz sistemi (MEKAP Ortaklığında)
Patent
Pending / Applied, The Invention Recourse Number: 2018/19243 , Standard Registration
2017
2017Mechanism to Automatically Obtain Road Facilities and Connections from a Map Provider
Patent
Registered / Approved, The Invention Registration Number: TR 2015 07427 B , Standard Registration
2017
2017Synthetic Population Synthesis Method
Patent
Registered / Approved, The Invention Registration Number: TR 2015 07903 B , Standard Registration
Activities in Scientific Journals
2017 - Continues
2017 - ContinuesTURKISH JOURNAL OF ELECTRICAL ENGINEERING & COMPUTER SCIENCES
Assistant Editor/Section Editor
Scientific Refereeing
March 2015
March 2015TUBITAK Project
March 2015
March 2015TUBITAK Project
March 2015
March 2015TUBITAK Project
February 2015
February 2015TUBITAK Project
July 2013
July 2013Academic Radiology
Other Indexed Journal
July 2013
July 2013Biomedical Signal Processing and Control
SCI Journal
November 2012
November 2012Academic Radiology
Other Indexed Journal
Congress and Symposium Activities
01 September 2011 - 01 September 2011
01 September 2011 - 01 September 2011ImageCLEF 2011
Attendee
Amsterdam-Netherlands
01 September 2009 - 01 September 2009
01 September 2009 - 01 September 2009