Publications & Works

Publication Network

Published journal articles indexed by SCI, SSCI, and AHCI

Exploring epigenetic drugs as potential inhibitors of SARS-CoV-2 main protease: a docking and MD simulation study

Uzuner U., Akkus E., Kocak A., Çelik Uzuner S.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS , 2023 (SCI-Expanded) identifier identifier identifier

Newly Synthesized N-Glycosidic Halochalcones Reveal Inhibitory Activity on Pancreatic Triacylglycerol Lipase

Yikilmaz M., Fandakli S., ŞENER S. Ö., BADEM M., KANBOLAT Ş., YAYLI N., et al.
Chemistry of Natural Compounds , vol.59, no.4, pp.629-637, 2023 (SCI-Expanded) identifier

Artificial intelligence-based HDX (AI-HDX) prediction reveals fundamental characteristics to protein dynamics: Mechanisms on SARS-CoV-2 immune escape

Yu J., Uzuner U., Long B., Wang Z., Yuan J. S., Dai S. Y.
iScience , vol.26, no.4, 2023 (SCI-Expanded) identifier identifier

Dihydroisocoumarins and Phenylglycosides from Scorzonera longiana, Their Antimicrobial Activities and Molecular Docking Studies

KORKMAZ B., RENDA G., BOZDAL G., ÇOŞKUNÇELEBİ K., Bozdeveci A., UZUNER U., et al.
Chemistry and Biodiversity , vol.20, no.4, 2023 (SCI-Expanded) identifier identifier identifier

The effect of friction stir process on the mechanical, tribological, and biocompatibility properties of AZ31B magnesium alloy as a biomaterial: A pilot study

Kahramanzade H., Celik-Uzuner S., Uzuner U., Sert Y., Küçükömeroğlu T.
PROCEEDINGS OF THE INSTITUTION OF MECHANICAL ENGINEERS PART H-JOURNAL OF ENGINEERING IN MEDICINE , vol.236, pp.1720-1731, 2022 (SCI-Expanded) identifier identifier identifier

Homology modeling and heterologous expression of highly alkaline subtilisin-like serine protease fromBacillus haloduransC-125

Tekin A., Uzuner U., Sezen K.
BIOTECHNOLOGY LETTERS , vol.43, no.2, pp.479-494, 2021 (SCI-Expanded) Sustainable Development identifier identifier identifier

The Detailed Comparison of Cell Death Detected by Annexin V-PI Counterstain Using Fluorescence Microscope, Flow Cytometry and Automated Cell Counter in Mammalian and Microalgae Cells

Koç E., Celik-Uzuner S., Uzuner U., Cakmak R.
JOURNAL OF FLUORESCENCE , vol.28, no.6, pp.1393-1404, 2018 (SCI-Expanded) Sustainable Development identifier identifier identifier

Improved pulp bleaching potential of Bacillus subtilis WB800 through overexpression of three lignolytic enzymes from various bacteria

OZER A., UZUNER U., GÜLER H. İ., Sal F., BELDÜZ A. O., DENİZ İ., et al.
BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY , vol.65, no.4, pp.560-571, 2018 (SCI-Expanded) identifier identifier identifier

Redesigning pH optimum of Geobacillus sp TF16 endoxylanase through in silico designed DNA swapping strategy

UZUNER U., ÇANAKÇI S., Bektas K., SAPMAZ M. T., BELDÜZ A. O.
BIOCHIMIE , vol.137, pp.174-189, 2017 (SCI-Expanded) Creative Commons License identifier identifier identifier

Effects of various estrogen ligands on the structural conformation of human estrogen receptor alpha

Chen X., UZUNER U., Li M., Shi W., Yuan J. S., Dai S. Y.
INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE , vol.40, 2017 (SCI-Expanded) identifier

Phytoestrogens and Mycoestrogens Induce Signature Structure Dynamics Changes on Estrogen Receptor

Chen X., Uzuner U., Li M., Shi W., Yuan J. S., Dai S. Y.
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH , vol.13, no.9, 2016 (SCI-Expanded) identifier identifier identifier

Comparative analysis of insect gut symbionts for composition-function relationships and biofuel application potential

Shi W., UZUNER U., Huang L., Jesudhasan P. R., Pillai S. D., Yuan J. S.
Biofuels , vol.2, no.5, pp.529-544, 2011 (SCI-Expanded) identifier

HDX-Analyzer: a novel package for statistical analysis of protein structure dynamics

Liu S., Liu L., UZUNER U., Zhou X., Gu M., Shi W., et al.
BMC BIOINFORMATICS , vol.12, 2011 (SCI-Expanded) Creative Commons License identifier identifier identifier

Enzyme structure dynamics of xylanase I from Trichoderma longibrachiatum

Uzuner U., Shi W., Liu L., Liu S., Dai S. Y., Yuan J. S.
BMC BIOINFORMATICS , vol.11, 2010 (SCI-Expanded) Creative Commons License identifier identifier identifier

Internal transcribed spacer (ITS) polymorphism in the wild Primula (Primulaceae) taxa of Turkey

Gultepe M., Uzuner U., ÇOŞKUNÇELEBİ K., BELDÜZ A. O., TERZİOĞLU S.
TURKISH JOURNAL OF BOTANY , vol.34, no.3, pp.147-157, 2010 (SCI-Expanded) identifier identifier

Articles Published in Other Journals

An Extensive Method for Maintenance of Sterility in Mammalian Cell Culture Laboratory Routine

ÇELİK UZUNER S., UZUNER U.
Challenges , vol.8, no.2, pp.1-6, 2017 (Peer-Reviewed Journal)

Relationships among some endemic Hieracium L s str Asteraceae taxa based on internal transcribed spacer ITS

GÜLTEPE M., ÇOŞKUNÇELEBİ K., BELDÜZ A. O., UZUNER U.
Biological Diversity and Conservation , vol.6, no.2, pp.134-141, 2014 (Peer-Reviewed Journal)

Refereed Congress / Symposium Publications in Proceedings

The Utilization of Microalgal Wastes in Mass Production of Medicinal Plants

EL M., ÇAKMAK R., UZUNER U.
International Eurasian Conference on Biotechnology and Biochemistry (BioTechBioChem 2020), Ankara, Turkey, 16 December 2020

Chlorella vulgaris is a Promising Biofertilizer for Camellia sinensis Organic Farming

CAKMAK R., EL M., UZUNER U.
International Eurasian Conference on Biotechnology and Biochemistry (BioTechBioChem 2020), Ankara, Turkey, 16 December 2020

Algae Potentials for Crop Protection and Modern Agriculture

Uzuner U.
Eurasian Congress on Molecular Biotechnology, Trabzon, Turkey, 19 - 21 September 2019, pp.39-40 Sustainable Development

Extracellular Production of Bacillus halodurans C-125 Alkaline Protease in Bacillus subtilis XW800

SEZEN K., TEKİN A., UZUNER U.
Eurasian Congress on Molecular Biotechnology, 19 - 21 September 2019

In-Depth Structural Analysis of Thermostable Alkaline Serine Protease from Bacillus halodurans C-125: An in silico Approach.

Tekin A., UZUNER U., SEZEN K.
International Conference Of Genomics And Bioinformatics (ICGB), Aydın, Turkey, 1 - 04 November 2018, pp.1

Effects of various estrogen ligands on the structural conformation of human estrogen receptor ?

Chen X., UZUNER U., Li M., Shi W., Yuan J. S., Dai S. Y.
22nd World Congress on Advances in Oncology and 20th International Symposium on Molecular Medicine, Atina, Greece, 5 - 07 October 2017, pp.11-12 Sustainable Development

Structure and Homology Modelling of Arabidopsis thaliana Non-expresser of Pathogenesis Related 1 Gene and Thioredoxin 5

UZUNER U.
2nd Japan – Turkey International Symposium on Pharmaceutical and Biomedical Sciences (JATUSPAB-2), Trabzon, Turkey, 11 - 12 September 2017, pp.22

Empowering enzyme characteristics through rational design

UZUNER U., ÇANAKÇI S., Bektas K. I., TUNCEL M., BELDÜZ A. O.
European Biotechnology Congress, Dubrovnik, Croatia, 25 - 27 May 2017, vol.256 identifier

Determination of paper bleaching potentials of some ligninolytic enzymes produced in operon form

ÇANAKÇI S., Ozer A., UZUNER U., GÜLER H. İ., BELDÜZ A. O., DENİZ İ.
European Biotechnology Congress, Dubrovnik, Croatia, 25 - 27 May 2017, vol.256 identifier

DETERMINATION OF WASTE PAPER PULP BLEACHING CAPACITY OF THREE LIGNINOLYTIC ENZYMES PRODUCED SIMULTANEOUSLY

BELDÜZ A. O., ÖZER A., UZUNER U., GÜLER H. İ., DENİZ İ., ÇANAKÇI S.
Internatioanl DNA Day and Genome Congress, Kırşehir, Turkey, 24 - 28 April 2017, pp.149 Creative Commons License

Improving the Alkaline Tolerance of Geobacillus sp.TF16 Endoxylanase by In Silico Design Driven DNA Swapping

Uzuner U., Tuncel M., İnan K., Canakcı S., Beldüz A. O.
11th International Conference on Protein Stabilisation, İstanbul, Turkey, 9 - 11 May 2016, pp.1

TF16 endoxylanase by In Silico Design Driven DNA Swapping

UZUNER U., İNAN BEKTAŞ K., tuncel m., ÇANAKÇI S., BELDÜZ A. O.
11th International Conference on Protein Stabilisation, 9 - 11 May 2016

Construction and Characterization of A New Chimeric Xylanase Active At High Temperature and pH

TUNCEL M., UZUNER U., ÇOLAK D. N., BELDÜZ A. O., ÇANAKÇI S.
ICBMB 2015 International Conference on Biochemistry and Molecular Biology, Paris, France, 17 - 24 April 2015, pp.22

Hidrojen Deuterium Değişimi Kütle Spektrometrisi Tabanlı Endo Beta (1,4) Ksilanaz 1 in Enzim Karakteristiklerinin Geliştirilmesi

UZUNER U., Sun S., Shi W., Dai S. Y., Yuan J. S.
22. Ulusal Biyoloji Kongresi, Eskişehir, Turkey, 23 - 27 June 2014, pp.178

Yüksek Enerji İçerikli Hidrokarbon Üretimine Yönelik Olarak Oryza sativa spp. Böcek Savunma Geninin Chlamydomonas reinhardtii Hücrelerinde Overekspresyonu

UZUNER U., Syrenne R., Kyoung Kim, ., Yuan J. S.
22. Ulusal Biyoloji Kongresi, Eskişehir, Turkey, 23 - 27 June 2014, pp.277

Creating chimeras of different xylanases isolated from two Geobacillus species with DNA shuffling

TUNCEL M., UZUNER U., BELDÜZ A. O., ÇANAKÇI S.
3rd International Molecular Biology and Biotechnology Congress 2014, Sarajevo, Bosnia And Herzegovina, 2 - 06 June 2014, pp.161

Improving the Efficiency of Homologous Gene Replacement by Disrupting the NHEJ Pathway for Gene KusA in the Oleaginous Fungus Mortierella alpina

Krueger K., Dai Z., UZUNER U.
Annual Meeting of the California-Nevada Section of the APS, California, United States Of America, 2 - 03 November 2012, vol.57, no.13, pp.1 Sustainable Development

Agrobacterium-Based Engineering of Chlamydomonas reinhardtii (CC-124) For Autotrophic Production of Terpenoid Hydrocarbons

UZUNER U., Syrenne R., Xie S., Dai S. Y., Dai S. Y., Yuan J. S.
2nd International Conference on Algal Biomass, Biofuels & Bioproducts, San Diego, California, United States Of America, 10 - 13 June 2012, pp.7

Hydrogen Deuterium Exchange Mass Spectrometry-Based Enzyme Dynamics Analysis Reveals New Structure Determinants And Mechanisms

UZUNER U., Shi W., Guo H., Dai S. Y., Yuan J. S.
Symposium for Biotechnology Fuels and Chemicals (34th SBFC), New Orleans, Louisiana, United States Of America, 29 April - 04 May 2012, pp.10-4

Metabolic Engineering of Green Algae for Autotrophic Production of Terpenoid Hydrocarbons

UZUNER U., Syrenne R., Xie S., Dai S. Y., Yuan J. S.
Symposium for Biotechnology Fuels and Chemicals (34th SBFC), New Orleans, Louisiana, United States Of America, 29 April - 04 May 2012, pp.12-3

Beyond Structure Characterization: Structure Dynamics (Hydrogen Deuterium Exchange) Guided Biocatalyst Improvement

UZUNER U., Shi W., Johnson Q., Guo H., Dai S. Y., Yuan J. S.
24th Sanibel Conference on Mass Spectrometry January, Pete Beach, Florida, United States Of America, 19 January 2012, pp.14-15

Dramatically Different Molecular Dynamics of Two Proteins with Similar Folding as Probed by Hydrogen Deuterium Exchange Mass Spectrometry and Molecular Dynamics Simulation

UZUNER U., Shi W., Johnson Q., Guo H., Dai S. Y., Yuan J. S.
24th Sanibel Conference on Mass Spectrometry January, Pete Beach, Florida, United States Of America, 19 January 2012, pp.18

A Novel Package for Statistical Analysis of Protein Structure Dynamics

Liu S., Liu L., UZUNER U., Zhou X., Gu M., Shi W., et al.
The Ninth Asia Pacific Bioinformatics Conference (APBC 2011), Incheon, South Korea, South Korea, 11 - 14 January 2011, pp.8

Novel Software Package for HDX-Mass Spectrometry Analysis

Liu L., Zhou X., UZUNER U., Dai S. Y., Yuan J. S.
7th Annual MidSouth Computational Biology and Bioin-formatics Society (MCBIOS) Conference, Jonesboro, Arkansas, United States Of America, 19 - 20 February 2010, pp.14

Structure Dynamics Analysis of Xylanases

UZUNER U., Shi W., Liu L., Dai S. Y., Yuan J. S.
MidSouth Computational Biology and Bioinformatics Society (7th Annual MCBIOS Conference), Jonesboro, Arkansas, United States Of America, 19 - 20 February 2010, pp.12

Bazı Endemik Hieracium L. (Asteraceae) Türlerinin ITS nrDNA Dizileri Bakımından Karşılaştırılması

GÜLTEPE M., ÇOŞKUNÇELEBİ K., UZUNER U., BELDÜZ A. O., ÇANAKÇI S., BERİŞ F. Ş.
19. Ulusal Biyoloji Kongresi, Trabzon, Turkey, 23 - 27 June 2008, pp.461

Bazı Primula L. (Primulaceae) Türlerinin nrITS Bölgeleri Bakımından Karşılaştırılması

GÜLTEPE M., UZUNER U., ÇOŞKUNÇELEBİ K., BELDÜZ A. O., TERZİOĞLU S.
19. Ulusal Biyoloji Kongresi, Trabzon, Turkey, 23 - 27 June 2008, pp.472

Bazı Hieracium L. (Asteraceae) Türlerinin Nüklear rDNA ITS Bölgeleri Açısından Karşılaştırılması

ÇOŞKUNÇELEBİ K., GÜLTEPE M., UZUNER U., ÇANAKÇI S., BELDÜZ A. O.
18. Ulusal Biyoloji Kongresi, Aydın, Turkey, 26 - 30 June 2006, pp.264

Bazı Hieracium L. (Asteraceae) Türlerinin Nüklear rDNA ITS Bölgeleri Açısınndan Karşılaştırılması

ÇOŞKUNÇELEBİ K., GÜLTEPE M., UZUNER U., ÇANAKÇI S., BELDÜZ A. O.
18. Ulusal Biyoloji Kongresi, Aydın, Turkey, 26 - 30 June 2006, pp.264

Books & Book Chapters

Hücre İskelet Sistemleri

UZUNER U.
in: BECKER'İN HÜCRE DÜNYASI, Ali Osman BELDÜZ, Editor, PALME YAYINEVİ, New Jersey, pp.351-376, 2019

Salicylic Acid: Molecular Basis of Stress Resistance in Plants

UZUNER U., SAĞLAM A., KADIOĞLU A.
in: Salicylic Acid: A Multifaceted Hormone, Rahat Nazar, Noushina Iqbal, Nafees A. Khan, Editor, Springer, Springer Singapore, pp.163-199, 2017

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Publication

48

Citation (WoS)

91

H-Index (WoS)

6

Citation (Scopus)

113

H-Index (Scopus)

7

Project

15

Intellectual Property

1

Open Access

2
UN Sustainable Development Goals